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Volume 20 | Number 2 | June 2007

Special Issue: A Sea of Microbes







SPECIAL ISSUE FEATURES

SECTION I. PROLOGUE

Chapter 1. Microbial Oceanography: Roots and Branches

Foundations of Microbial Oceanography
D.M. Karl and L.M. Proctor. 2007. Oceanography 20(2):16–27, http://dx.doi.org/10.5670/oceanog.2007.44.

SECTION II. IDEAS, CONCEPTS, AND PARADIGMS

Chapter 2. The Microbial Loop

The Microbial Loop
L.R. Pomeroy, P.J. leB. Williams, F. Azam, and J.E. Hobbie. 2007. Oceanography 20(2):28–33, http://dx.doi.org/10.5670/oceanog.2007.45.

SECTION III. TOOLS, METHODOLOGIES, INSTRUMENTATION, AND APPROACHES

Chapter 3. Sampling the Ocean

Patterns and Prediction in Microbial Oceanography
J.J. Cullen, W.F. Doolittle, S.A. Levin, and W.K.W. Li. 2007. Oceanography 20(2):34–46, http://dx.doi.org/10.5670/oceanog.2007.46.

Chapter 4. Genomics and Metagenomics

Genomes of Sea Microbes
M.A. Moran and E.V. Armbrust. 2007. Oceanography 20(2):47–55, http://dx.doi.org/10.5670/oceanog.2007.47.

Marine Environmental Genomics: Unlocking the Ocean's Secrets
R.A. Edwards and E.A. Dinsdale. 2007. Oceanography 20(2):56–61, http://dx.doi.org/10.5670/oceanog.2007.48.

Chapter 5. Culturing the "Unculturables"

New Cultivation Strategies Bring More Microbial Plankton Species
into the Laboratory

S.J. Giovannoni, R. Foster, M.S. Rappé, and S. Epstein. 2007. Oceanography 20(2):62–69, http://dx.doi.org/10.5670/oceanog.2007.49.

Chapter 6. In Situ Instrumentation

In Situ Instrumentation
J. Paul, C. Scholin, G. van den Engh, and M.J. Perry. 2007. Oceanography 20(2):70–78, http://dx.doi.org/10.5670/oceanog.2007.50.

SECTION IV. PROCESSES

Chapter 7. Energy Capture, Photosynthesis, Chemosynthesis,
and Proteorhodopsin

Energy Cycle in the Ocean: Powering the Microbial World
Z. Kolber. 2007. Oceanography 20(2):79–88, http://dx.doi.org/10.5670/oceanog.2007.51.

Chapter 8. Energy Dissipation, Respiration, and Growth

Microbes and the Dissipation of Energy and Respiration: From Cells to Ecosystems
C.A. Carlson, P.A. del Giorgio, and G.J. Herndl. 2007. Oceanography 20(2):89–100, http://dx.doi.org/10.5670/oceanog.2007.52.

Chapter 9. Microbes and Major Elemental Cycles

What's New in the Nitrogen Cycle?
B.B. Ward, D.G. Capone, and J.P. Zehr. 2007. Oceanography 20(2):101–109, http://dx.doi.org/10.5670/oceanog.2007.53.

Microbes and the Marine Phosphorus Cycle
S.T. Dyhrman, J.W. Ammerman, and B.A.S. Van Mooy. 2007. Oceanography 20(2):110–116, http://dx.doi.org/10.5670/oceanog.2007.54.

The Sulfur Cycle
S.M. Sievert, R.P. Kiene, and H.N. Schulz-Vogt. 2007. Oceanography 20(2):117–123, http://dx.doi.org/10.5670/oceanog.2007.55.

SECTION V. EXAMPLES OF DIVERSITY

Chapter 10. Microbial Communities

A. Water Column

Microbial Domains in the Ocean: A Lesson from the Archaea
E.F. DeLong. 2007. Oceanography 20(2):124–129, http://dx.doi.org/10.5670/oceanog.2007.56.

Oceanic Protists
B.F. Sherr, E.B. Sherr, D.A. Caron, D. Vaulot, and A.Z. Worden. 2007. Oceanography 20(2):130–134, http://dx.doi.org/10.5670/oceanog.2007.57.

Exploring the Vast Diversity of Marine Viruses
M. Breitbart, L.R. Thompson, C.A. Suttle, and M.B. Sullivan. 2007. Oceanography 20(2):135–139, http://dx.doi.org/10.5670/oceanog.2007.58.

B. Polar Microbiology

Microbiology in Polar Oceans
J.T. Hollibaugh, C. Lovejoy, and A.E. Murray. 2007. Oceanography 20(2):140–145, http://dx.doi.org/10.5670/oceanog.2007.59.

C. Coral Reef Microbiology

Coral Microbiology
E. Rosenberg, C.A. Kellogg, and F. Rohwer. 2007. Oceanography 20(2):146–154, http://dx.doi.org/10.5670/oceanog.2007.60.

SECTION VI. GLOBAL SYNTHESIS, MODELING, AND PREDICTION

Chapter 11. Modeling and Prediction

Modeling and Prediction of Marine Microbial Populations in the Genomic Era
R.R. Hood, E.A. Laws, M.J. Follows, and D.A. Siegel. 2007. Oceanography 20(2):155–165, http://dx.doi.org/10.5670/oceanog.2007.61.

SECTION VII. FUTURE PROSPECTUS

Chapter 12. The Future of Marine Microbial Ecology

Predictions for the Future of Microbial Oceanography
D.L. Kirchman and C. Pedrós-Alió. 2007. Oceanography 20(2):166–171, http://dx.doi.org/10.5670/oceanog.2007.62.


BREAKING WAVES

RAPID: Research on Automated Plankton Identification
M.C. Benfield, P. Grosjean, P.F. Culverhouse, X. Irigoien, M.E. Sieracki, A. Lopez-Urrutia, H.G. Dam, Q. Hu, C.S. Davis, A. Hansen, C.H. Pilskaln, E.M. Riseman, H. Schultz, P.E. Utgoff, and G. Gorsky. 2007. Oceanography 20(2):172–187, http://dx.doi.org/10.5670/oceanog.2007.63.


DEPARTMENTS

QUARTERDECK | Solitary or Social?
L.M. Proctor. 2007. Oceanography 20(2):5, http://dx.doi.org/10.5670/oceanog.2007.64.

FROM THE PRESIDENT | How'd They Do That?
R. Spinrad. 2007. Oceanography 20(2):7, http://dx.doi.org/10.5670/oceanog.2007.65.

A Tribute to Melbourne Briscoe
R. Spinrad. 2007. Oceanography 20(2):9, http://dx.doi.org/10.5670/oceanog.2007.66.

RIPPLE MARKS—THE STORY BEHIND THE STORY | Double, Double, Toil and Trouble • Cockles and Mussels: Alive Alive Oh? • It's "Jellyfish Season" • These Fish Are Hot
C.L. Dybas. 2007. Oceanography 20(2):10–13, http://dx.doi.org/10.5670/oceanog.2007.67.

FROM THE GUEST EDITORS | Introduction to "A Sea of Microbes" Special Issue
L.M. Proctor and D.M. Karl. 2007. Oceanography 20(2):14–15, http://dx.doi.org/10.5670/oceanog.2007.68.

ROGER REVELLE COMMEMORATIVE LECTURE | What Corals are Dying to Tell Us About CO2 and Ocean Acidification
K. Caldeira. 2007. Oceanography 20(2):188–195, http://dx.doi.org/10.5670/oceanog.2007.69.

EDUCATION | Teaching Environmental Sciences in an Evolving World
M. Tomczak. 2007. Oceanography 20(2):196–198, http://dx.doi.org/10.5670/oceanog.2007.70.

HANDS-ON OCEANOGRAPHY | Phosphorus in Our Waters
A. Paytan and K. McLaughlin. 2007. Oceanography 20(2):200–206, http://dx.doi.org/10.5670/oceanog.2007.71.

BOOK REVIEW | The Deep: The Extraordinary Creatures of the Abyss
E. Kappel. 2007. Oceanography 20(2):207–208, http://dx.doi.org/10.5670/oceanog.2007.72.

BOOK REVIEW | The Equations of Oceanic Motions
R. de Szoeke. 2007. Oceanography 20(2):208–210, http://dx.doi.org/10.5670/oceanog.2007.73.

BOOK REVIEW | The Gulf Stream
B.A. Warren. 2007. Oceanography 20(2):211–212, http://dx.doi.org/10.5670/oceanog.2007.74.